gmxxpm2ps[-f[.xpm]][-f2[.xpm]][-di[.m2p]][-do[.m2p]]. [-o[.eps]][-xpm[.xpm]][-nice][-[no]w][-[no]frame]. [-title][-[no]yonce][-legend][-diag]. [-size][-bx][-by][-rainbow]. [-gradient][-skip][-[no]zeroline]. blackwhite=no;Obsolete. titlefont=Times-Roman;APostScriptFont. titlefontsize=20;Fontsize(pt). legend=yes;Showthelegend. legendfont=Times-Roman;APostScriptFont. legendfontsize=14;Fontsize(pt). x-minor=5;Id.Minorticks. x-majorticklen=8.0;x-majorticklength. x-minorticklen=4.0;x-minorticklength. x-fontsize=16;Fontsize(pt). x-font=Times-Roman;APostScriptFont. x-tickfontsize=10;Fontsize(pt). x-tickf
gmxx2top[-f[.gro/.g96/...]][-o[.top]][-r[.rtp]][-nice]. [-[no]remdih][-[no]pairs][-name][-[no]pbc][-[no]pdbq]
gmxwheel[-f[.dat]][-o[.eps]][-nice][-r0] [-rot0][-T][-[no]nn]gmx wheel用于绘制指定序列的螺旋轮示意图. 输入序列来自于.dat文件, 其中的第一行为残基的总数目, 接下来的每一行包含一个残基名称.输入/输出文件选项选项默认值类
gmxwham[-ix[.dat]][-if[.dat]][-it[.dat]][-ip[.dat]]
gmxview[-f[.xtc/.trr/...]][-s[.tpr/.tpb/...]][-n[.ndx]]
gmxvelacc[-f[.trr/.cpt/...]][-s[.tpr/.tpb/...]][-n[.ndx]]
gmxvanhove[-f[.xtc/.trr/...]][-s[.tpr/.tpb/...]][-n[.ndx]]
gmxtune_pme[-p[.out]][-err[.log]][-so[.tpr/.tpb/...]]. [-s[.tpr/.tpb/...]][-o[.trr/.cpt/...]][-x[.xtc/.tng]]. [-tableb[.xvg]][-rerun[.xtc/.trr/...]][-tpi[.xvg]]. [-[no]launch][-[no]bench][-[no]check][-[no]append]
gmxtrjorder[-f[.xtc/.trr/...]][-s[.tpr/.tpb/...]][-n[.ndx]]
[-[no]settime][-[no]sort][-[no]keeplast][-[no]overwrite]
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